PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_14180V3.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 210aa    MW: 23974.3 Da    PI: 6.5097
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_14180V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC167.12.2e-52521561102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql +fw++q   +e+++d k h+lPlarikki+k+dedvkmi++eaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr di
  Pp3c13_14180V3.4.p  52 QLAQFWAQQtqeMEEVNDSKTHQLPLARIKKIMKSDEDVKMIATEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDI 142
                         7899**999889******************************************************************************* PP

               NF-YC  89 fdflvdivprdelk 102
                         fdflvdivprdelk
  Pp3c13_14180V3.4.p 143 FDFLVDIVPRDELK 156
                         ***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.38E-3225146IPR009072Histone-fold
PfamPF008083.6E-2174137IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.5E-3675152IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MATQHAHVPP SSTAQMSPHA APTIRLQQQM HYPNHAPHQQ QQLHYQQIQK QQLAQFWAQQ  60
TQEMEEVNDS KTHQLPLARI KKIMKSDEDV KMIATEAPVL FSKACEMFIL ELTLRSWIHT  120
EENKRRTLQR NDIAGAITRG DIFDFLVDIV PRDELKEEDL GVPWSGVPAD GVQYGGMYYP  180
PMPGQPIHPM RAPAVLAPEQ QQQPQQQLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-424615212119HapE
4g92_C3e-424615212119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.25191e-145gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346078.12e-64PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008346079.12e-64PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356118.12e-64PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356119.12e-64PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008372003.12e-64PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9SMP02e-61NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA9NUT02e-66A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S158_8V6.11e-125(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-56nuclear factor Y, subunit C2